$25.00

FASTQ Mapping to hg38
[FASTQhg38]

Date Added: Thursday 10 June, 2021

by Dragan Obrenovic

I warmly recommend this service - you not only get your FASTQ files aligned to Hg38, but also a comprehensive review of all your positive SNPs in regard to reference genome, and novel SNPs which are named and registered in the YBrowse database. For example, this is the full list of output files that I received:

37329_23andMe_all_hg19.zip
37329_23andMe_annotated_hg19.vcf.gz
37329_23andMe_annotated_hg19.vcf.gz.tb
37329_bwa-mem_hg38_chrY.bam
37329_bwa-mem_hg38_chrY.bam.bai
37329_bwa-mem_hg38_sorted.bam.bai
37329_bwa-mem_hg38_sorted.bam.idxstats
37329_bwa-mem_rCRS_chrM.bam
37329_bwa-mem_rCRS_chrM.bam.bai
37329_cladeFinderOutput.csv
37329_hg38.vcf.gz
37329_hg38.vcf.gz.tbi
37329_mtDNA.fasta
37329_negatives.txt
37329_positives.txt
37329_result_summary.txt
chrY_called_37329_hg38.vcf.gz
chrY_called_37329_hg38.vcf.gz.tbi
chrY_cleaned_37329_hg38.vcf.gz
chrY_cleaned_37329_hg38.vcf.gz.tbi
chrY_derived_37329_hg38.vcf.gz
chrY_derived_37329_hg38.vcf.gz.tbi
chrY_INDELs_37329_hg38.vcf.gz
chrY_INDELs_37329_hg38.vcf.gz.tbi
chrY_novel_SNPs_37329_hg38.vcf.gz
chrY_novel_SNPs_37329_hg38.vcf.gz.tbi
chrY_novel_SNPs_37329_hg38.xls

Rating: 5 of 5 Stars! [5 of 5 Stars!]

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